Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 AL603756.1-201ENST00000606511 2163 ntBASIC17.28■□□□□ 0.36
RTL3Q8N8U3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 BCAR1-209ENST00000546196 1340 ntBASIC17.27■□□□□ 0.36
RTL3Q8N8U3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 POLD2P1-201ENST00000511220 997 ntBASIC17.27■□□□□ 0.36
RTL3Q8N8U3 KRT19P2-202ENST00000557173 1012 ntBASIC17.27■□□□□ 0.36
RTL3Q8N8U3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 AL031432.2-201ENST00000566714 459 ntBASIC17.27■□□□□ 0.36
RTL3Q8N8U3 AL928711.1-201ENST00000570165 459 ntBASIC17.27■□□□□ 0.36
RTL3Q8N8U3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.27■□□□□ 0.36
RTL3Q8N8U3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
RTL3Q8N8U3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RTL3Q8N8U3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 SNX33P1-201ENST00000592116 1762 ntBASIC17.26■□□□□ 0.35
RTL3Q8N8U3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 HMGA1P7-201ENST00000406908 502 ntBASIC17.26■□□□□ 0.35
RTL3Q8N8U3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 PGAM5P1-201ENST00000518923 814 ntBASIC17.26■□□□□ 0.35
RTL3Q8N8U3 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.26■□□□□ 0.35
RTL3Q8N8U3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 AC025580.3-201ENST00000617932 1424 ntBASIC17.26■□□□□ 0.35
RTL3Q8N8U3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
RTL3Q8N8U3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 NKILA-202ENST00000614771 2598 ntBASIC17.25■□□□□ 0.35
RTL3Q8N8U3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 AGGF1P2-201ENST00000426656 2106 ntBASIC17.25■□□□□ 0.35
RTL3Q8N8U3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms