Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 SERBP1P5-201ENST00000510079 1181 ntBASIC20.83■□□□□ 0.93
SYNE4Q8N205 RARRES2P9-201ENST00000565168 469 ntBASIC20.83■□□□□ 0.93
SYNE4Q8N205 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SYNE4Q8N205 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SYNE4Q8N205 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SYNE4Q8N205 AC139713.2-201ENST00000641328 2723 ntBASIC20.83■□□□□ 0.92
SYNE4Q8N205 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 AC004890.2-204ENST00000481968 304 ntBASIC20.82■□□□□ 0.92
SYNE4Q8N205 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 AC073389.1-201ENST00000595595 795 ntBASIC20.82■□□□□ 0.92
SYNE4Q8N205 AC021097.1-201ENST00000607902 574 ntBASIC20.82■□□□□ 0.92
SYNE4Q8N205 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SYNE4Q8N205 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE4Q8N205 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 TSSK5P-201ENST00000423978 907 ntBASIC20.81■□□□□ 0.92
SYNE4Q8N205 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 CR383656.12-201ENST00000549567 513 ntBASIC20.81■□□□□ 0.92
SYNE4Q8N205 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 AC018529.1-201ENST00000613063 361 ntBASIC20.81■□□□□ 0.92
SYNE4Q8N205 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE4Q8N205 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SYNE4Q8N205 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 AC006277.1-201ENST00000624348 1610 ntBASIC20.8■□□□□ 0.92
SYNE4Q8N205 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 OR8S1-201ENST00000310194 1080 ntBASIC20.8■□□□□ 0.92
SYNE4Q8N205 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 AC027307.3-201ENST00000594262 1100 ntBASIC20.8■□□□□ 0.92
SYNE4Q8N205 AC003101.2-201ENST00000612557 442 ntBASIC20.8■□□□□ 0.92
SYNE4Q8N205 AC025048.6-201ENST00000634326 1161 ntBASIC20.8■□□□□ 0.92
SYNE4Q8N205 AL358472.5-202ENST00000641448 1267 ntBASIC20.8■□□□□ 0.92
SYNE4Q8N205 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms