Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 MIR1199-201ENST00000621445 119 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 AL805961.1-202ENST00000641562 540 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 PI4KAP1-204ENST00000612579 1703 ntBASIC14.97□□□□□ -0.01
SKA3Q8IX90 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 AC092910.1-201ENST00000482027 1129 ntBASIC14.97□□□□□ -0.01
SKA3Q8IX90 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.97□□□□□ -0.01
SKA3Q8IX90 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SKA3Q8IX90 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 AC068418.2-201ENST00000577309 3703 ntBASIC14.96□□□□□ -0.01
SKA3Q8IX90 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 FDX1P1-201ENST00000449115 551 ntBASIC14.96□□□□□ -0.01
SKA3Q8IX90 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 AC093909.1-201ENST00000504731 1122 ntBASIC14.96□□□□□ -0.01
SKA3Q8IX90 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms