Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.46■□□□□ 0.23
YBX1P67809 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
YBX1P67809 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
YBX1P67809 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
YBX1P67809 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
YBX1P67809 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
YBX1P67809 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.46■□□□□ 0.23
YBX1P67809 LINC00554-201ENST00000564841 3011 ntBASIC16.46■□□□□ 0.23
YBX1P67809 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
YBX1P67809 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
YBX1P67809 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
YBX1P67809 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
YBX1P67809 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
YBX1P67809 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.45■□□□□ 0.22
YBX1P67809 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.45■□□□□ 0.22
YBX1P67809 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
YBX1P67809 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
YBX1P67809 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.45■□□□□ 0.22
YBX1P67809 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.45■□□□□ 0.22
YBX1P67809 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.45■□□□□ 0.22
YBX1P67809 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.45■□□□□ 0.22
YBX1P67809 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
YBX1P67809 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
YBX1P67809 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
YBX1P67809 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
YBX1P67809 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.44■□□□□ 0.22
YBX1P67809 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.44■□□□□ 0.22
YBX1P67809 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 AC087163.2-201ENST00000457299 853 ntBASIC16.44■□□□□ 0.22
YBX1P67809 AC108751.1-201ENST00000490852 363 ntBASIC16.44■□□□□ 0.22
YBX1P67809 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.44■□□□□ 0.22
YBX1P67809 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.44■□□□□ 0.22
YBX1P67809 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 Z83851.2-201ENST00000609564 659 ntBASIC16.44■□□□□ 0.22
YBX1P67809 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
YBX1P67809 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
YBX1P67809 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
YBX1P67809 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
YBX1P67809 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
YBX1P67809 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.43■□□□□ 0.22
YBX1P67809 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.43■□□□□ 0.22
YBX1P67809 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
YBX1P67809 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.43■□□□□ 0.22
YBX1P67809 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.43■□□□□ 0.22
YBX1P67809 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.43■□□□□ 0.22
YBX1P67809 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
YBX1P67809 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms