Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CDH11P55287 AL121912.1-201ENST00000603683 238 ntBASIC15.52■□□□□ 0.08
CDH11P55287 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.52■□□□□ 0.08
CDH11P55287 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDH11P55287 REXO1L6P-202ENST00000619970 1078 ntBASIC15.52■□□□□ 0.08
CDH11P55287 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.52■□□□□ 0.08
CDH11P55287 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CDH11P55287 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.52■□□□□ 0.07
CDH11P55287 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH11P55287 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.52■□□□□ 0.07
CDH11P55287 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.52■□□□□ 0.07
CDH11P55287 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH11P55287 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH11P55287 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH11P55287 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
CDH11P55287 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 PCDHB17P-201ENST00000539533 2393 ntBASIC15.51■□□□□ 0.07
CDH11P55287 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDH11P55287 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.51■□□□□ 0.07
CDH11P55287 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH11P55287 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
CDH11P55287 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 AKR1C7P-201ENST00000305623 895 ntBASIC15.51■□□□□ 0.07
CDH11P55287 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.51■□□□□ 0.07
CDH11P55287 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.51■□□□□ 0.07
CDH11P55287 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH11P55287 AP002469.2-201ENST00000531724 424 ntBASIC15.51■□□□□ 0.07
CDH11P55287 AL160237.2-201ENST00000556165 472 ntBASIC15.51■□□□□ 0.07
CDH11P55287 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH11P55287 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH11P55287 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDH11P55287 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 PCDHA1-201ENST00000378133 2726 ntBASIC15.51■□□□□ 0.07
CDH11P55287 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CDH11P55287 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH11P55287 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CDH11P55287 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.5■□□□□ 0.07
CDH11P55287 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CDH11P55287 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDH11P55287 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.5■□□□□ 0.07
CDH11P55287 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.5■□□□□ 0.07
CDH11P55287 AC005336.2-201ENST00000593183 939 ntBASIC15.5■□□□□ 0.07
CDH11P55287 AC104692.2-201ENST00000603054 253 ntBASIC15.5■□□□□ 0.07
CDH11P55287 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH11P55287 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
CDH11P55287 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH11P55287 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH11P55287 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH11P55287 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH11P55287 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH11P55287 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms