Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
VCPP55072 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 SLC25A1P3-201ENST00000395415 828 ntBASIC18.07■□□□□ 0.48
VCPP55072 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.07■□□□□ 0.48
VCPP55072 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.07■□□□□ 0.48
VCPP55072 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.07■□□□□ 0.48
VCPP55072 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.07■□□□□ 0.48
VCPP55072 AC025678.2-201ENST00000562061 970 ntBASIC18.07■□□□□ 0.48
VCPP55072 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.07■□□□□ 0.48
VCPP55072 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.07■□□□□ 0.48
VCPP55072 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.07■□□□□ 0.48
VCPP55072 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VCPP55072 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
VCPP55072 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VCPP55072 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 AC006504.4-201ENST00000592118 1568 ntBASIC18.06■□□□□ 0.48
VCPP55072 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.06■□□□□ 0.48
VCPP55072 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
VCPP55072 AC003669.1-201ENST00000334569 611 ntBASIC18.06■□□□□ 0.48
VCPP55072 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.06■□□□□ 0.48
VCPP55072 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.06■□□□□ 0.48
VCPP55072 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.06■□□□□ 0.48
VCPP55072 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
VCPP55072 AC093520.2-201ENST00000561830 333 ntBASIC18.06■□□□□ 0.48
VCPP55072 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.06■□□□□ 0.48
VCPP55072 AL513210.1-201ENST00000629608 234 ntBASIC18.06■□□□□ 0.48
VCPP55072 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.06■□□□□ 0.48
VCPP55072 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
VCPP55072 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.06■□□□□ 0.48
VCPP55072 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VCPP55072 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
VCPP55072 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCPP55072 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VCPP55072 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.05■□□□□ 0.48
VCPP55072 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VCPP55072 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VCPP55072 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VCPP55072 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VCPP55072 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VCPP55072 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VCPP55072 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
VCPP55072 AC004461.1-201ENST00000412461 403 ntBASIC18.05■□□□□ 0.48
VCPP55072 PMS2P4-201ENST00000412466 1052 ntBASIC18.05■□□□□ 0.48
VCPP55072 IGLL3P-201ENST00000412472 434 ntBASIC18.05■□□□□ 0.48
VCPP55072 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCPP55072 HLA-V-201ENST00000429037 534 ntBASIC18.05■□□□□ 0.48
VCPP55072 STK19B-204ENST00000512515 211 ntBASIC18.05■□□□□ 0.48
VCPP55072 IGHV3-52-201ENST00000519770 353 ntBASIC18.05■□□□□ 0.48
VCPP55072 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.05■□□□□ 0.48
VCPP55072 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.05■□□□□ 0.48
VCPP55072 STK25P1-201ENST00000585406 838 ntBASIC18.05■□□□□ 0.48
VCPP55072 AL008721.1-201ENST00000609964 604 ntBASIC18.05■□□□□ 0.48
VCPP55072 AC004790.2-201ENST00000623588 572 ntBASIC18.05■□□□□ 0.48
VCPP55072 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms