Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GPR89P-201ENST00000407924 1495 ntBASIC15.91■□□□□ 0.14
RFX3P48380 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.91■□□□□ 0.14
RFX3P48380 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX3P48380 AL139384.1-201ENST00000612143 3047 ntBASIC15.9■□□□□ 0.14
RFX3P48380 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
RFX3P48380 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.9■□□□□ 0.14
RFX3P48380 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.9■□□□□ 0.14
RFX3P48380 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.9■□□□□ 0.14
RFX3P48380 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 AC021087.4-201ENST00000563761 564 ntBASIC15.9■□□□□ 0.14
RFX3P48380 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.9■□□□□ 0.14
RFX3P48380 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX3P48380 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
RFX3P48380 AC018695.7-201ENST00000624587 2492 ntBASIC15.9■□□□□ 0.14
RFX3P48380 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX3P48380 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
RFX3P48380 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX3P48380 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX3P48380 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.14
RFX3P48380 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.14
RFX3P48380 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.89■□□□□ 0.13
RFX3P48380 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 RPS2P1-201ENST00000434010 821 ntBASIC15.89■□□□□ 0.13
RFX3P48380 AC079781.3-201ENST00000449110 356 ntBASIC15.89■□□□□ 0.13
RFX3P48380 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.89■□□□□ 0.13
RFX3P48380 FAM197Y8-203ENST00000450145 560 ntBASIC15.89■□□□□ 0.13
RFX3P48380 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.89■□□□□ 0.13
RFX3P48380 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 AC139887.3-201ENST00000568585 713 ntBASIC15.89■□□□□ 0.13
RFX3P48380 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.89■□□□□ 0.13
RFX3P48380 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.89■□□□□ 0.13
RFX3P48380 AL121912.1-201ENST00000603683 238 ntBASIC15.89■□□□□ 0.13
RFX3P48380 TP73-AS1-207ENST00000624167 988 ntBASIC15.89■□□□□ 0.13
RFX3P48380 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX3P48380 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RFX3P48380 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX3P48380 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
RFX3P48380 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RFX3P48380 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.88■□□□□ 0.13
RFX3P48380 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.88■□□□□ 0.13
RFX3P48380 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
RFX3P48380 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RFX3P48380 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.88■□□□□ 0.13
RFX3P48380 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RFX3P48380 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
RFX3P48380 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms