Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SHMT2P34897 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 LINC02012-201ENST00000608206 1725 ntBASIC16.54■□□□□ 0.24
SHMT2P34897 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.54■□□□□ 0.24
SHMT2P34897 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.54■□□□□ 0.24
SHMT2P34897 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.54■□□□□ 0.24
SHMT2P34897 RNA5SP416-201ENST00000516838 111 ntBASIC16.54■□□□□ 0.24
SHMT2P34897 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.54■□□□□ 0.24
SHMT2P34897 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.54■□□□□ 0.24
SHMT2P34897 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.54■□□□□ 0.24
SHMT2P34897 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.54■□□□□ 0.24
SHMT2P34897 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
SHMT2P34897 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHMT2P34897 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.53■□□□□ 0.24
SHMT2P34897 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SHMT2P34897 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SHMT2P34897 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SHMT2P34897 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.53■□□□□ 0.24
SHMT2P34897 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SHMT2P34897 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.53■□□□□ 0.24
SHMT2P34897 AC140113.2-201ENST00000604370 208 ntBASIC16.53■□□□□ 0.24
SHMT2P34897 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SHMT2P34897 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.53■□□□□ 0.24
SHMT2P34897 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHMT2P34897 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
SHMT2P34897 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SHMT2P34897 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SHMT2P34897 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 AC008741.2-201ENST00000612792 3115 ntBASIC16.52■□□□□ 0.24
SHMT2P34897 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
SHMT2P34897 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SHMT2P34897 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
SHMT2P34897 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SHMT2P34897 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SHMT2P34897 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
SHMT2P34897 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.52■□□□□ 0.24
SHMT2P34897 AC007967.2-201ENST00000432613 625 ntBASIC16.52■□□□□ 0.24
SHMT2P34897 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.52■□□□□ 0.24
SHMT2P34897 KRT18P3-201ENST00000451602 1288 ntBASIC16.52■□□□□ 0.24
SHMT2P34897 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHMT2P34897 AC064836.3-201ENST00000607928 673 ntBASIC16.52■□□□□ 0.24
SHMT2P34897 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms