Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PTPN4P29074 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 AC068472.1-201ENST00000474589 881 ntBASIC17■□□□□ 0.31
PTPN4P29074 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PTPN4P29074 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17■□□□□ 0.31
PTPN4P29074 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
PTPN4P29074 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17■□□□□ 0.31
PTPN4P29074 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17■□□□□ 0.31
PTPN4P29074 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PTPN4P29074 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTPN4P29074 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PTPN4P29074 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 TSPY26P-202ENST00000565928 3884 ntBASIC16.99■□□□□ 0.31
PTPN4P29074 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.99■□□□□ 0.31
PTPN4P29074 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PTPN4P29074 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PTPN4P29074 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
PTPN4P29074 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.99■□□□□ 0.31
PTPN4P29074 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.99■□□□□ 0.31
PTPN4P29074 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.99■□□□□ 0.31
PTPN4P29074 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.99■□□□□ 0.31
PTPN4P29074 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 AC009154.2-201ENST00000621177 724 ntBASIC16.99■□□□□ 0.31
PTPN4P29074 TP73-AS1-207ENST00000624167 988 ntBASIC16.99■□□□□ 0.31
PTPN4P29074 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.99■□□□□ 0.31
PTPN4P29074 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
PTPN4P29074 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTPN4P29074 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 AL365203.3-201ENST00000609742 2057 ntBASIC16.98■□□□□ 0.31
PTPN4P29074 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
PTPN4P29074 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.98■□□□□ 0.31
PTPN4P29074 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PTPN4P29074 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
PTPN4P29074 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.98■□□□□ 0.31
PTPN4P29074 FAM197Y8-203ENST00000450145 560 ntBASIC16.98■□□□□ 0.31
PTPN4P29074 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.98■□□□□ 0.31
PTPN4P29074 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN4P29074 AL773604.1-201ENST00000617417 272 ntBASIC16.98■□□□□ 0.31
PTPN4P29074 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms