Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC002558.1-201ENST00000488906 803 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 AC011495.1-201ENST00000498085 584 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.69□□□□□ -0.06
COL8A1P27658 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 AL138918.1-201ENST00000568306 659 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 CHCHD2P3-201ENST00000603038 451 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 AL512343.1-201ENST00000605837 169 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 CROCCP1-201ENST00000426910 5675 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.68□□□□□ -0.06
COL8A1P27658 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.68□□□□□ -0.06
COL8A1P27658 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.68□□□□□ -0.06
COL8A1P27658 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 AC012569.1-201ENST00000591191 1524 ntBASIC14.68□□□□□ -0.06
COL8A1P27658 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.68□□□□□ -0.06
COL8A1P27658 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
COL8A1P27658 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
COL8A1P27658 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC14.68□□□□□ -0.06
COL8A1P27658 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.68□□□□□ -0.06
COL8A1P27658 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
COL8A1P27658 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.68□□□□□ -0.06
COL8A1P27658 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
COL8A1P27658 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
COL8A1P27658 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL8A1P27658 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.67□□□□□ -0.06
COL8A1P27658 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL8A1P27658 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.67□□□□□ -0.06
COL8A1P27658 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.67□□□□□ -0.06
COL8A1P27658 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL8A1P27658 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.67□□□□□ -0.06
COL8A1P27658 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 AC119751.2-201ENST00000504529 210 ntBASIC14.67□□□□□ -0.06
COL8A1P27658 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.67□□□□□ -0.06
COL8A1P27658 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
COL8A1P27658 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.67□□□□□ -0.06
COL8A1P27658 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.67□□□□□ -0.06
COL8A1P27658 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.67□□□□□ -0.06
COL8A1P27658 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.67□□□□□ -0.06
COL8A1P27658 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms