Protein–RNA interactions for Protein: P20807

CAPN3, Calpain-3, humanhuman

Predictions only

Length 821 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3P20807 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.29■□□□□ 0.2
CAPN3P20807 AC079781.3-201ENST00000449110 356 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.29■□□□□ 0.2
CAPN3P20807 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
CAPN3P20807 KRT18P31-201ENST00000506277 1292 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CAPN3P20807 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.29■□□□□ 0.2
CAPN3P20807 AC011840.4-201ENST00000578471 627 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.29■□□□□ 0.2
CAPN3P20807 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 AL121912.1-201ENST00000603683 238 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 AC064862.7-201ENST00000604520 867 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.29■□□□□ 0.2
CAPN3P20807 AL732292.2-201ENST00000609649 430 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 PAUPAR-201ENST00000630360 2965 ntBASIC16.29■□□□□ 0.2
CAPN3P20807 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.29■□□□□ 0.2
CAPN3P20807 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CAPN3P20807 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.29■□□□□ 0.2
CAPN3P20807 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CAPN3P20807 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CAPN3P20807 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.28■□□□□ 0.2
CAPN3P20807 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CAPN3P20807 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
CAPN3P20807 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 AC091607.1-201ENST00000490318 1060 ntBASIC16.28■□□□□ 0.2
CAPN3P20807 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.28■□□□□ 0.2
CAPN3P20807 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.28■□□□□ 0.2
CAPN3P20807 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.28■□□□□ 0.2
CAPN3P20807 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.28■□□□□ 0.2
CAPN3P20807 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.28■□□□□ 0.2
CAPN3P20807 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.28■□□□□ 0.2
CAPN3P20807 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CAPN3P20807 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.28■□□□□ 0.2
CAPN3P20807 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.28■□□□□ 0.2
CAPN3P20807 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CAPN3P20807 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CAPN3P20807 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.27■□□□□ 0.2
CAPN3P20807 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.27■□□□□ 0.2
CAPN3P20807 AC005052.1-201ENST00000625181 2492 ntBASIC16.27■□□□□ 0.2
CAPN3P20807 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CAPN3P20807 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.27■□□□□ 0.2
CAPN3P20807 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CAPN3P20807 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.27■□□□□ 0.2
CAPN3P20807 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CAPN3P20807 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.27■□□□□ 0.2
CAPN3P20807 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CAPN3P20807 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.27■□□□□ 0.2
CAPN3P20807 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.27■□□□□ 0.2
CAPN3P20807 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.27■□□□□ 0.2
CAPN3P20807 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.27■□□□□ 0.2
CAPN3P20807 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.27■□□□□ 0.2
CAPN3P20807 AC090616.6-201ENST00000582640 721 ntBASIC16.27■□□□□ 0.2
CAPN3P20807 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.27■□□□□ 0.2
CAPN3P20807 IGHV3-41-201ENST00000613121 348 ntBASIC16.27■□□□□ 0.2
CAPN3P20807 AC073592.5-201ENST00000624854 528 ntBASIC16.27■□□□□ 0.2
CAPN3P20807 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CAPN3P20807 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CAPN3P20807 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CAPN3P20807 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CAPN3P20807 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CAPN3P20807 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
CAPN3P20807 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms