Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
APOBP04114 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
APOBP04114 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
APOBP04114 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
APOBP04114 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC10.33□□□□□ -0.76
APOBP04114 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC10.33□□□□□ -0.76
APOBP04114 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC10.33□□□□□ -0.76
APOBP04114 AL033527.5-202ENST00000641632 1098 ntBASIC10.33□□□□□ -0.76
APOBP04114 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC10.33□□□□□ -0.76
APOBP04114 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC10.32□□□□□ -0.76
APOBP04114 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC10.32□□□□□ -0.76
APOBP04114 COG4-212ENST00000564653 590 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 AC133963.1-201ENST00000504166 1679 ntBASIC10.32□□□□□ -0.76
APOBP04114 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 RN7SL828P-201ENST00000607615 303 ntBASIC10.32□□□□□ -0.76
APOBP04114 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 AC009542.2-202ENST00000619004 1067 ntBASIC10.32□□□□□ -0.76
APOBP04114 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 EGFEM1P-202ENST00000431685 1563 ntBASIC10.32□□□□□ -0.76
APOBP04114 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 KLF2P4-201ENST00000451959 1225 ntBASIC10.32□□□□□ -0.76
APOBP04114 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC10.32□□□□□ -0.76
APOBP04114 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC10.32□□□□□ -0.76
APOBP04114 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC10.32□□□□□ -0.76
APOBP04114 MIR6727-201ENST00000620702 65 ntBASIC10.32□□□□□ -0.76
APOBP04114 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC10.32□□□□□ -0.76
APOBP04114 AC009113.1-201ENST00000570267 2443 ntBASIC10.32□□□□□ -0.76
APOBP04114 AL354751.1-201ENST00000412768 1863 ntBASIC10.32□□□□□ -0.76
APOBP04114 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
APOBP04114 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
APOBP04114 VMO1-203ENST00000416307 712 ntTSL 2 BASIC10.31□□□□□ -0.76
APOBP04114 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC10.31□□□□□ -0.76
APOBP04114 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC10.31□□□□□ -0.76
APOBP04114 CTBP2P5-201ENST00000454986 1264 ntBASIC10.31□□□□□ -0.76
APOBP04114 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC10.31□□□□□ -0.76
APOBP04114 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC10.31□□□□□ -0.76
APOBP04114 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
APOBP04114 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC10.31□□□□□ -0.76
APOBP04114 NEU3-203ENST00000529024 581 ntTSL 3 BASIC10.31□□□□□ -0.76
APOBP04114 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC10.31□□□□□ -0.76
APOBP04114 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC10.31□□□□□ -0.76
APOBP04114 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC10.31□□□□□ -0.76
APOBP04114 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
APOBP04114 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC10.31□□□□□ -0.76
APOBP04114 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
APOBP04114 IGHJ2P-201ENST00000454480 60 ntBASIC10.31□□□□□ -0.76
APOBP04114 SDHAP3-202ENST00000515467 728 ntBASIC10.31□□□□□ -0.76
APOBP04114 AP000812.2-201ENST00000538934 718 ntBASIC10.31□□□□□ -0.76
APOBP04114 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC10.31□□□□□ -0.76
APOBP04114 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC10.31□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms