Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.69■□□□□ 0.42
APOEP02649 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
APOEP02649 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.68■□□□□ 0.42
APOEP02649 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
APOEP02649 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
APOEP02649 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
APOEP02649 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 AC124947.2-201ENST00000547118 1133 ntBASIC17.68■□□□□ 0.42
APOEP02649 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.68■□□□□ 0.42
APOEP02649 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.68■□□□□ 0.42
APOEP02649 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
APOEP02649 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 AGGF1P2-201ENST00000426656 2106 ntBASIC17.68■□□□□ 0.42
APOEP02649 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.68■□□□□ 0.42
APOEP02649 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
APOEP02649 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 AL118508.1-201ENST00000613502 2345 ntBASIC17.67■□□□□ 0.42
APOEP02649 FRMD8P1-201ENST00000440433 1524 ntBASIC17.67■□□□□ 0.42
APOEP02649 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 AC002310.6-201ENST00000624451 1377 ntBASIC17.67■□□□□ 0.42
APOEP02649 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
APOEP02649 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
APOEP02649 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.67■□□□□ 0.42
APOEP02649 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
APOEP02649 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.67■□□□□ 0.42
APOEP02649 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
APOEP02649 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.67■□□□□ 0.42
APOEP02649 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 HCG4B-203ENST00000450128 991 ntBASIC17.67■□□□□ 0.42
APOEP02649 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.67■□□□□ 0.42
APOEP02649 SLC25A6P2-201ENST00000497974 877 ntBASIC17.67■□□□□ 0.42
APOEP02649 POLD2P1-201ENST00000511220 997 ntBASIC17.67■□□□□ 0.42
APOEP02649 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
APOEP02649 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
APOEP02649 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
APOEP02649 AC129492.6-201ENST00000611383 1305 ntBASIC17.67■□□□□ 0.42
APOEP02649 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.67■□□□□ 0.42
APOEP02649 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
APOEP02649 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
APOEP02649 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.66■□□□□ 0.42
APOEP02649 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
APOEP02649 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.66■□□□□ 0.42
APOEP02649 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.66■□□□□ 0.42
APOEP02649 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.66■□□□□ 0.42
APOEP02649 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms