Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 AL596087.1-201ENST00000400979 1969 ntBASIC12.74□□□□□ -0.37
HLA-DQA1P01909 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DQA1P01909 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 AC013268.4-201ENST00000637413 2228 ntBASIC12.73□□□□□ -0.37
HLA-DQA1P01909 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 MDFI-202ENST00000373050 809 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 RPS2P55-201ENST00000397318 883 ntBASIC12.73□□□□□ -0.37
HLA-DQA1P01909 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 SAPCD2P4-201ENST00000424595 1171 ntBASIC12.73□□□□□ -0.37
HLA-DQA1P01909 AC012618.2-201ENST00000428058 849 ntBASIC12.73□□□□□ -0.37
HLA-DQA1P01909 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 AC107956.1-201ENST00000494359 873 ntBASIC12.73□□□□□ -0.37
HLA-DQA1P01909 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 REXO2-216ENST00000544196 452 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DQA1P01909 EGFEM1P-202ENST00000431685 1563 ntBASIC12.73□□□□□ -0.37
HLA-DQA1P01909 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DQA1P01909 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DQA1P01909 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DQA1P01909 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DQA1P01909 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms