Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TNFP01375 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
TNFP01375 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.42■□□□□ 0.22
TNFP01375 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TNFP01375 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TNFP01375 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TNFP01375 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.42■□□□□ 0.22
TNFP01375 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.42■□□□□ 0.22
TNFP01375 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.42■□□□□ 0.22
TNFP01375 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TNFP01375 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.41■□□□□ 0.22
TNFP01375 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.41■□□□□ 0.22
TNFP01375 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.41■□□□□ 0.22
TNFP01375 FAM58DP-201ENST00000428076 619 ntBASIC16.41■□□□□ 0.22
TNFP01375 RBPMS2P1-201ENST00000437762 623 ntBASIC16.41■□□□□ 0.22
TNFP01375 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 FAM86GP-201ENST00000448322 971 ntBASIC16.41■□□□□ 0.22
TNFP01375 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 LINC01225-203ENST00000563550 1244 ntBASIC16.41■□□□□ 0.22
TNFP01375 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TNFP01375 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.41■□□□□ 0.22
TNFP01375 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TNFP01375 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
TNFP01375 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TNFP01375 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TNFP01375 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TNFP01375 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 AC016027.1-202ENST00000607927 1699 ntBASIC16.4■□□□□ 0.22
TNFP01375 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TNFP01375 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TNFP01375 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TNFP01375 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.4■□□□□ 0.22
TNFP01375 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.4■□□□□ 0.22
TNFP01375 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 MIR770-201ENST00000390219 98 ntBASIC16.4■□□□□ 0.22
TNFP01375 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.4■□□□□ 0.22
TNFP01375 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.4■□□□□ 0.22
TNFP01375 AC067863.1-201ENST00000494933 530 ntBASIC16.4■□□□□ 0.22
TNFP01375 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 AC027307.2-201ENST00000591252 911 ntBASIC16.4■□□□□ 0.22
TNFP01375 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 AC008267.7-201ENST00000624570 1194 ntBASIC16.4■□□□□ 0.22
TNFP01375 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.4■□□□□ 0.22
TNFP01375 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TNFP01375 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TNFP01375 AC141586.5-201ENST00000624546 2050 ntBASIC16.39■□□□□ 0.21
TNFP01375 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TNFP01375 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
TNFP01375 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.39■□□□□ 0.21
TNFP01375 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms