Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.73■□□□□ 0.43
SOX1O00570 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX1O00570 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX1O00570 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX1O00570 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SOX1O00570 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX1O00570 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 EGFEM1P-202ENST00000431685 1563 ntBASIC17.72■□□□□ 0.43
SOX1O00570 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.72■□□□□ 0.43
SOX1O00570 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
SOX1O00570 YBX1P6-201ENST00000442962 1002 ntBASIC17.72■□□□□ 0.43
SOX1O00570 SERBP1P3-201ENST00000459980 809 ntBASIC17.72■□□□□ 0.43
SOX1O00570 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.72■□□□□ 0.43
SOX1O00570 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.72■□□□□ 0.43
SOX1O00570 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.72■□□□□ 0.43
SOX1O00570 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.72■□□□□ 0.43
SOX1O00570 AL022328.3-201ENST00000607943 679 ntBASIC17.72■□□□□ 0.43
SOX1O00570 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.72■□□□□ 0.43
SOX1O00570 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.72■□□□□ 0.43
SOX1O00570 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX1O00570 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 LINC00895-201ENST00000629028 1637 ntBASIC17.72■□□□□ 0.43
SOX1O00570 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX1O00570 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.71■□□□□ 0.43
SOX1O00570 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SOX1O00570 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SOX1O00570 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.71■□□□□ 0.43
SOX1O00570 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
SOX1O00570 AP000812.2-201ENST00000538934 718 ntBASIC17.71■□□□□ 0.43
SOX1O00570 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX1O00570 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 AC091167.2-201ENST00000579581 588 ntBASIC17.71■□□□□ 0.43
SOX1O00570 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.71■□□□□ 0.43
SOX1O00570 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX1O00570 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX1O00570 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX1O00570 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX1O00570 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SOX1O00570 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SOX1O00570 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SOX1O00570 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.71■□□□□ 0.42
SOX1O00570 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX1O00570 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SOX1O00570 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX1O00570 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX1O00570 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX1O00570 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX1O00570 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX1O00570 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX1O00570 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SOX1O00570 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX1O00570 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SOX1O00570 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX1O00570 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX1O00570 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.7■□□□□ 0.42
SOX1O00570 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX1O00570 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX1O00570 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms