Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 AC010491.1-201ENST00000563101 2797 ntBASIC16.02■□□□□ 0.15
AP4S1Q9Y587 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4S1Q9Y587 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 INGX-201ENST00000359239 846 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AP000523.1-201ENST00000398242 1049 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AC034232.1-201ENST00000506026 1064 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 EGLN1P1-201ENST00000531623 762 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AP000525.1-201ENST00000608286 694 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AL391807.1-203ENST00000604392 2365 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 AL135999.2-201ENST00000622438 1686 ntBASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4S1Q9Y587 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 AC126755.1-201ENST00000525846 6405 ntBASIC16■□□□□ 0.15
AP4S1Q9Y587 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 FUT8-AS1-201ENST00000621019 1521 ntBASIC16■□□□□ 0.15
AP4S1Q9Y587 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16■□□□□ 0.15
AP4S1Q9Y587 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
AP4S1Q9Y587 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16■□□□□ 0.15
AP4S1Q9Y587 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 UBE2SP1-201ENST00000450587 669 ntBASIC16■□□□□ 0.15
AP4S1Q9Y587 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 AC128688.1-201ENST00000487626 519 ntBASIC16■□□□□ 0.15
AP4S1Q9Y587 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16■□□□□ 0.15
AP4S1Q9Y587 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16■□□□□ 0.15
AP4S1Q9Y587 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16■□□□□ 0.15
AP4S1Q9Y587 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16■□□□□ 0.15
AP4S1Q9Y587 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16■□□□□ 0.15
AP4S1Q9Y587 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
AP4S1Q9Y587 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16■□□□□ 0.15
AP4S1Q9Y587 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16■□□□□ 0.15
AP4S1Q9Y587 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4S1Q9Y587 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms