Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC21.08■□□□□ 0.97
RTCBQ9Y3I0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC21.08■□□□□ 0.97
RTCBQ9Y3I0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.08■□□□□ 0.97
RTCBQ9Y3I0 CHCHD2P3-201ENST00000603038 451 ntBASIC21.08■□□□□ 0.97
RTCBQ9Y3I0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RTCBQ9Y3I0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 MXI1-205ENST00000393134 889 ntTSL 2 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 MIR1909-201ENST00000411312 80 ntBASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 AC008494.3-201ENST00000606615 944 ntBASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RTCBQ9Y3I0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 OSM-203ENST00000403463 464 ntTSL 3 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 AC093004.1-201ENST00000508850 424 ntBASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 DOC2GP-202ENST00000514950 1163 ntBASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTCBQ9Y3I0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 AC108860.2-201ENST00000562760 2183 ntBASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.05■□□□□ 0.96
RTCBQ9Y3I0 RN7SL618P-201ENST00000477850 296 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms