Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 TIMM8BP1-201ENST00000452384 211 ntBASIC18.1■□□□□ 0.49
CNTN3Q9P232 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 AC243562.1-201ENST00000560672 389 ntBASIC18.1■□□□□ 0.49
CNTN3Q9P232 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.1■□□□□ 0.49
CNTN3Q9P232 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 AC022211.2-201ENST00000585075 2527 ntBASIC18.1■□□□□ 0.49
CNTN3Q9P232 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
CNTN3Q9P232 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 AP001094.4-201ENST00000579008 2176 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 SPDYE11-202ENST00000450699 704 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 SPDYE9P-201ENST00000570642 692 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 SPDYE10P-202ENST00000612005 668 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 SPDYE8P-202ENST00000612377 668 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 AC138932.1-201ENST00000534164 6830 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.09■□□□□ 0.49
CNTN3Q9P232 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CNTN3Q9P232 AD000864.1-201ENST00000624076 2295 ntBASIC18.09■□□□□ 0.49
CNTN3Q9P232 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.08■□□□□ 0.49
CNTN3Q9P232 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.08■□□□□ 0.49
CNTN3Q9P232 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 WASH6P-202ENST00000359512 1437 ntBASIC18.08■□□□□ 0.49
CNTN3Q9P232 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CNTN3Q9P232 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.08■□□□□ 0.49
CNTN3Q9P232 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CNTN3Q9P232 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
CNTN3Q9P232 AC124067.4-201ENST00000519691 2379 ntBASIC18.08■□□□□ 0.48
CNTN3Q9P232 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 PMS2P2-201ENST00000425039 1128 ntBASIC18.08■□□□□ 0.48
CNTN3Q9P232 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 AC079140.1-201ENST00000508039 487 ntBASIC18.08■□□□□ 0.48
CNTN3Q9P232 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 AC021097.1-201ENST00000607902 574 ntBASIC18.08■□□□□ 0.48
CNTN3Q9P232 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.08■□□□□ 0.48
CNTN3Q9P232 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CNTN3Q9P232 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms