Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 ABCD1P5-201ENST00000445663 754 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 NUS1P1-201ENST00000446295 882 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 AC074051.2-201ENST00000565115 352 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 GZMM-202ENST00000592501 941 ntTSL 3 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 AC092329.2-201ENST00000598402 547 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 CYP2T1P-202ENST00000641596 2535 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00477Q96M19 HLA-A-202ENST00000376806 1854 ntBASIC12.7□□□□□ -0.38
LINC00477Q96M19 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00477Q96M19 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 IER3-202ENST00000376377 1350 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 TLE1-202ENST00000376484 666 ntTSL 3 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AP002414.1-201ENST00000391405 1147 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AP002383.4-201ENST00000442518 975 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AL590326.2-201ENST00000625139 305 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AC006449.5-201ENST00000610658 2098 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 AC148477.5-201ENST00000625164 1645 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 LINC00895-201ENST00000629028 1637 ntBASIC12.69□□□□□ -0.38
LINC00477Q96M19 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00477Q96M19 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00477Q96M19 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 LINC00982-205ENST00000420957 435 ntBASIC12.68□□□□□ -0.38
LINC00477Q96M19 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 PRYP5-201ENST00000451909 266 ntBASIC12.68□□□□□ -0.38
LINC00477Q96M19 MPI-205ENST00000562606 1052 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 AC012615.1-201ENST00000565797 1299 ntBASIC12.68□□□□□ -0.38
LINC00477Q96M19 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 AC010331.1-201ENST00000611423 582 ntBASIC12.68□□□□□ -0.38
LINC00477Q96M19 AC073592.4-201ENST00000623827 446 ntBASIC12.68□□□□□ -0.38
LINC00477Q96M19 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms