Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 AP003097.1-201ENST00000530657 1135 ntBASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28AQ8IWP9 PCDHA3-202ENST00000532566 4594 ntBASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 POU5F1P3-201ENST00000428824 1078 ntBASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms