Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AL512652.2-201ENST00000625156 1716 ntBASIC19.27■□□□□ 0.68
ATL3Q6DD88 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATL3Q6DD88 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATL3Q6DD88 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATL3Q6DD88 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATL3Q6DD88 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATL3Q6DD88 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
ATL3Q6DD88 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATL3Q6DD88 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
ATL3Q6DD88 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 AC087163.2-201ENST00000457299 853 ntBASIC19.26■□□□□ 0.67
ATL3Q6DD88 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 MTDHP3-201ENST00000594186 672 ntBASIC19.26■□□□□ 0.67
ATL3Q6DD88 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.26■□□□□ 0.67
ATL3Q6DD88 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
ATL3Q6DD88 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATL3Q6DD88 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.25■□□□□ 0.67
ATL3Q6DD88 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATL3Q6DD88 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.25■□□□□ 0.67
ATL3Q6DD88 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 FOSL1P1-201ENST00000511041 816 ntBASIC19.24■□□□□ 0.67
ATL3Q6DD88 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms