Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.24■□□□□ 0.51
KRT39Q6A163 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.24■□□□□ 0.51
KRT39Q6A163 MIR4751-201ENST00000578027 74 ntBASIC18.24■□□□□ 0.51
KRT39Q6A163 AC005412.3-201ENST00000580309 715 ntBASIC18.24■□□□□ 0.51
KRT39Q6A163 MIR4492-201ENST00000581627 80 ntBASIC18.24■□□□□ 0.51
KRT39Q6A163 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.24■□□□□ 0.51
KRT39Q6A163 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.24■□□□□ 0.51
KRT39Q6A163 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.24■□□□□ 0.51
KRT39Q6A163 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.24■□□□□ 0.51
KRT39Q6A163 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
KRT39Q6A163 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 AC131009.4-201ENST00000624048 1740 ntBASIC18.23■□□□□ 0.51
KRT39Q6A163 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
KRT39Q6A163 AC084018.2-201ENST00000613093 2607 ntBASIC18.23■□□□□ 0.51
KRT39Q6A163 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.23■□□□□ 0.51
KRT39Q6A163 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.23■□□□□ 0.51
KRT39Q6A163 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.23■□□□□ 0.51
KRT39Q6A163 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.23■□□□□ 0.51
KRT39Q6A163 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.23■□□□□ 0.51
KRT39Q6A163 AL139011.1-202ENST00000642063 584 ntBASIC18.23■□□□□ 0.51
KRT39Q6A163 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.23■□□□□ 0.51
KRT39Q6A163 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
KRT39Q6A163 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 SLC22A20-204ENST00000530038 1673 ntBASIC18.22■□□□□ 0.51
KRT39Q6A163 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
KRT39Q6A163 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
KRT39Q6A163 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
KRT39Q6A163 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.22■□□□□ 0.51
KRT39Q6A163 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 PMS2P1-201ENST00000431037 1228 ntBASIC18.22■□□□□ 0.51
KRT39Q6A163 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 AC079776.4-201ENST00000511039 504 ntBASIC18.22■□□□□ 0.51
KRT39Q6A163 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.22■□□□□ 0.51
KRT39Q6A163 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 HLA-A-202ENST00000376806 1854 ntBASIC18.22■□□□□ 0.51
KRT39Q6A163 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
KRT39Q6A163 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.22■□□□□ 0.51
KRT39Q6A163 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
KRT39Q6A163 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.21■□□□□ 0.51
KRT39Q6A163 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.21■□□□□ 0.51
KRT39Q6A163 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
KRT39Q6A163 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.21■□□□□ 0.51
KRT39Q6A163 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms