Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 AL671883.3-201ENST00000603274 991 ntBASIC20.4■□□□□ 0.86
VPS53Q5VIR6 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VPS53Q5VIR6 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VPS53Q5VIR6 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS53Q5VIR6 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VPS53Q5VIR6 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.39■□□□□ 0.86
VPS53Q5VIR6 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
VPS53Q5VIR6 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 AL022342.1-201ENST00000400363 863 ntBASIC20.39■□□□□ 0.85
VPS53Q5VIR6 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 AC106730.1-201ENST00000566722 1090 ntBASIC20.39■□□□□ 0.85
VPS53Q5VIR6 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 AL118508.1-201ENST00000613502 2345 ntBASIC20.39■□□□□ 0.85
VPS53Q5VIR6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS53Q5VIR6 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 IGLL3P-201ENST00000412472 434 ntBASIC20.38■□□□□ 0.85
VPS53Q5VIR6 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 PCDHB17P-201ENST00000539533 2393 ntBASIC20.38■□□□□ 0.85
VPS53Q5VIR6 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS53Q5VIR6 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 AC107918.2-201ENST00000530817 355 ntBASIC20.37■□□□□ 0.85
VPS53Q5VIR6 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 REXO1L3P-201ENST00000622202 1288 ntBASIC20.37■□□□□ 0.85
VPS53Q5VIR6 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 RNF216P1-203ENST00000404404 2427 ntBASIC20.37■□□□□ 0.85
VPS53Q5VIR6 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms