Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 STK25P1-201ENST00000585406 838 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AC145285.6-201ENST00000604632 637 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AL390719.2-201ENST00000606993 987 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 TUBB8P12-201ENST00000308911 1335 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 TUBB7P-202ENST00000428444 1305 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 TUBB8P7-204ENST00000567960 1332 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 LIN28AP1-201ENST00000429574 405 ntBASIC15.16■□□□□ 0.02
CCDC58Q4VC31 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 AC092597.1-201ENST00000487352 616 ntBASIC15.16■□□□□ 0.02
CCDC58Q4VC31 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.16■□□□□ 0.02
CCDC58Q4VC31 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC58Q4VC31 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms