Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 REXO1L6P-201ENST00000603433 1515 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 AL353705.2-201ENST00000428243 662 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 HLA-V-204ENST00000476601 1289 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 FAM8A2P-201ENST00000528813 1142 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 MIR4538-201ENST00000581377 78 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 AL021920.2-201ENST00000624828 1351 ntBASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC88AQ3V6T2 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC88AQ3V6T2 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 GNAQP1-201ENST00000444815 1067 ntBASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 BTBD7P1-201ENST00000447253 1453 ntBASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 ANKRD19P-201ENST00000338192 862 ntBASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 RN7SL828P-201ENST00000607615 303 ntBASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC88AQ3V6T2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 AL023806.1-201ENST00000603994 1649 ntBASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 HLA-H-201ENST00000383620 1096 ntBASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 USP32P1-208ENST00000506594 1164 ntBASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms