Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 AC008267.7-201ENST00000624570 1194 ntBASIC17.9■□□□□ 0.46
USP41Q3LFD5 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.9■□□□□ 0.46
USP41Q3LFD5 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP41Q3LFD5 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP41Q3LFD5 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
USP41Q3LFD5 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 LINC00896-202ENST00000609602 2128 ntBASIC17.89■□□□□ 0.45
USP41Q3LFD5 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 GNAS-203ENST00000306120 1878 ntBASIC17.89■□□□□ 0.45
USP41Q3LFD5 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 KLF2P3-201ENST00000451977 1087 ntBASIC17.89■□□□□ 0.45
USP41Q3LFD5 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 AC026150.2-201ENST00000564693 1156 ntBASIC17.89■□□□□ 0.45
USP41Q3LFD5 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 TNRC18P3-201ENST00000441896 2691 ntBASIC17.89■□□□□ 0.45
USP41Q3LFD5 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
USP41Q3LFD5 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP41Q3LFD5 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 SPDYE7P-202ENST00000420373 878 ntBASIC17.88■□□□□ 0.45
USP41Q3LFD5 AC093214.1-201ENST00000511688 1107 ntBASIC17.88■□□□□ 0.45
USP41Q3LFD5 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 AC027307.2-201ENST00000591252 911 ntBASIC17.88■□□□□ 0.45
USP41Q3LFD5 AL390955.2-201ENST00000603032 514 ntBASIC17.88■□□□□ 0.45
USP41Q3LFD5 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP41Q3LFD5 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
USP41Q3LFD5 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
USP41Q3LFD5 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP41Q3LFD5 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.87■□□□□ 0.45
USP41Q3LFD5 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms