Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 PCDHA12-202ENST00000613593 2588 ntBASIC20.3■□□□□ 0.84
RFX7Q2KHR2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 AP001350.2-201ENST00000625104 1094 ntBASIC20.3■□□□□ 0.84
RFX7Q2KHR2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX7Q2KHR2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 AL627223.1-201ENST00000416693 442 ntBASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 MIR4515-201ENST00000584082 81 ntBASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX7Q2KHR2 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 AC002056.1-201ENST00000395613 760 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 HLA-J-203ENST00000494367 1087 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 KRT8P48-201ENST00000515599 1220 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 AC109322.1-201ENST00000524499 1264 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 AC106028.4-201ENST00000614509 607 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 KRT8P39-201ENST00000396270 1433 ntBASIC20.28■□□□□ 0.84
RFX7Q2KHR2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX7Q2KHR2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX7Q2KHR2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms