Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.1■□□□□ 0.01
H3F3AP84243 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 AC106886.4-201ENST00000623557 2502 ntBASIC15.1■□□□□ 0.01
H3F3AP84243 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.1■□□□□ 0.01
H3F3AP84243 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
H3F3AP84243 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 AL353732.1-201ENST00000569618 1459 ntBASIC15.1■□□□□ 0.01
H3F3AP84243 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.1■□□□□ 0.01
H3F3AP84243 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
H3F3AP84243 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.1■□□□□ 0.01
H3F3AP84243 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 RHOQP3-201ENST00000437982 621 ntBASIC15.1■□□□□ 0.01
H3F3AP84243 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.1■□□□□ 0.01
H3F3AP84243 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.1■□□□□ 0.01
H3F3AP84243 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
H3F3AP84243 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.1■□□□□ 0.01
H3F3AP84243 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
H3F3AP84243 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.1■□□□□ 0.01
H3F3AP84243 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
H3F3AP84243 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.1■□□□□ 0.01
H3F3AP84243 AC006277.1-201ENST00000624348 1610 ntBASIC15.1■□□□□ 0.01
H3F3AP84243 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
H3F3AP84243 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 SLC22A20-204ENST00000530038 1673 ntBASIC15.09■□□□□ 0.01
H3F3AP84243 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 AC124067.4-201ENST00000519691 2379 ntBASIC15.09■□□□□ 0.01
H3F3AP84243 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 AC096734.2-201ENST00000562054 433 ntBASIC15.09■□□□□ 0.01
H3F3AP84243 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
H3F3AP84243 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.09■□□□□ 0.01
H3F3AP84243 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 AC131009.4-201ENST00000624048 1740 ntBASIC15.09■□□□□ 0.01
H3F3AP84243 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
H3F3AP84243 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
H3F3AP84243 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
H3F3AP84243 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
H3F3AP84243 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
H3F3AP84243 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.08■□□□□ 0.01
H3F3AP84243 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.08■□□□□ 0.01
H3F3AP84243 AL391256.1-201ENST00000443260 1855 ntBASIC15.08■□□□□ 0.01
H3F3AP84243 PCDHA12-202ENST00000613593 2588 ntBASIC15.08■□□□□ 0
H3F3AP84243 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
H3F3AP84243 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms