Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.63■□□□□ 0.09
RNF4P78317 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 HCG4-201ENST00000418983 998 ntBASIC15.63■□□□□ 0.09
RNF4P78317 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.63■□□□□ 0.09
RNF4P78317 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
RNF4P78317 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.63■□□□□ 0.09
RNF4P78317 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.63■□□□□ 0.09
RNF4P78317 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.63■□□□□ 0.09
RNF4P78317 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.63■□□□□ 0.09
RNF4P78317 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
RNF4P78317 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.63■□□□□ 0.09
RNF4P78317 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 SLC22A20-204ENST00000530038 1673 ntBASIC15.63■□□□□ 0.09
RNF4P78317 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 AC131009.4-201ENST00000624048 1740 ntBASIC15.63■□□□□ 0.09
RNF4P78317 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.62■□□□□ 0.09
RNF4P78317 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
RNF4P78317 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.62■□□□□ 0.09
RNF4P78317 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.62■□□□□ 0.09
RNF4P78317 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.62■□□□□ 0.09
RNF4P78317 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 MIR3687-2-201ENST00000577708 61 ntBASIC15.62■□□□□ 0.09
RNF4P78317 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.62■□□□□ 0.09
RNF4P78317 AC010327.4-202ENST00000591484 748 ntBASIC15.62■□□□□ 0.09
RNF4P78317 MIR3687-1-201ENST00000614492 61 ntBASIC15.62■□□□□ 0.09
RNF4P78317 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
RNF4P78317 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.62■□□□□ 0.09
RNF4P78317 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
RNF4P78317 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
RNF4P78317 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
RNF4P78317 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
RNF4P78317 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.62■□□□□ 0.09
RNF4P78317 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RNF4P78317 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
RNF4P78317 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
RNF4P78317 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.61■□□□□ 0.09
RNF4P78317 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
RNF4P78317 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
RNF4P78317 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.61■□□□□ 0.09
RNF4P78317 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.61■□□□□ 0.09
RNF4P78317 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
RNF4P78317 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
RNF4P78317 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.61■□□□□ 0.09
RNF4P78317 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.61■□□□□ 0.09
RNF4P78317 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 AC087641.1-201ENST00000557561 1021 ntBASIC15.61■□□□□ 0.09
RNF4P78317 AC068137.2-201ENST00000605408 478 ntBASIC15.61■□□□□ 0.09
RNF4P78317 AP001350.2-201ENST00000625104 1094 ntBASIC15.61■□□□□ 0.09
RNF4P78317 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms