Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NKAPP1-205ENST00000585790 367 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 AL445228.2-201ENST00000605589 952 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 AC091076.1-201ENST00000610741 619 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA1P55317 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA1P55317 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
FOXA1P55317 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
FOXA1P55317 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
FOXA1P55317 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA1P55317 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.37■□□□□ 0.21
FOXA1P55317 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA1P55317 HLA-J-202ENST00000469281 1241 ntBASIC16.37■□□□□ 0.21
FOXA1P55317 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.37■□□□□ 0.21
FOXA1P55317 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.37■□□□□ 0.21
FOXA1P55317 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA1P55317 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA1P55317 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
FOXA1P55317 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA1P55317 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
FOXA1P55317 AC007950.2-201ENST00000615045 2347 ntBASIC16.36■□□□□ 0.21
FOXA1P55317 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXA1P55317 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA1P55317 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
FOXA1P55317 AL162727.3-201ENST00000635661 2787 ntBASIC16.36■□□□□ 0.21
FOXA1P55317 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.36■□□□□ 0.21
FOXA1P55317 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.36■□□□□ 0.21
FOXA1P55317 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA1P55317 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA1P55317 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.36■□□□□ 0.21
FOXA1P55317 AL022326.1-202ENST00000641533 845 ntBASIC16.36■□□□□ 0.21
FOXA1P55317 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA1P55317 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXA1P55317 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
FOXA1P55317 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 SNX33P1-201ENST00000592116 1762 ntBASIC16.36■□□□□ 0.21
FOXA1P55317 NCF1C-201ENST00000438382 1427 ntBASIC16.36■□□□□ 0.21
FOXA1P55317 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA1P55317 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA1P55317 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms