Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
MSH3P20585 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
MSH3P20585 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.83■□□□□ 0.28
MSH3P20585 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH3P20585 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
MSH3P20585 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 CRYGEP-201ENST00000412192 528 ntBASIC16.83■□□□□ 0.28
MSH3P20585 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.83■□□□□ 0.28
MSH3P20585 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH3P20585 PRSS29P-201ENST00000440800 595 ntBASIC16.83■□□□□ 0.28
MSH3P20585 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH3P20585 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH3P20585 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH3P20585 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 AC145285.3-201ENST00000564603 959 ntBASIC16.83■□□□□ 0.28
MSH3P20585 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
MSH3P20585 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH3P20585 AC092068.3-201ENST00000587894 2016 ntBASIC16.83■□□□□ 0.28
MSH3P20585 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH3P20585 AC010654.1-201ENST00000615722 808 ntBASIC16.83■□□□□ 0.28
MSH3P20585 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH3P20585 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH3P20585 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
MSH3P20585 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH3P20585 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH3P20585 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH3P20585 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 AC002310.6-201ENST00000624451 1377 ntBASIC16.82■□□□□ 0.28
MSH3P20585 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH3P20585 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
MSH3P20585 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
MSH3P20585 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.82■□□□□ 0.28
MSH3P20585 SLC25A6P2-201ENST00000497974 877 ntBASIC16.82■□□□□ 0.28
MSH3P20585 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH3P20585 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.82■□□□□ 0.28
MSH3P20585 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
MSH3P20585 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH3P20585 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH3P20585 TNRC18P3-201ENST00000441896 2691 ntBASIC16.82■□□□□ 0.28
MSH3P20585 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
MSH3P20585 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH3P20585 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
MSH3P20585 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH3P20585 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH3P20585 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 TUBB8P12-201ENST00000308911 1335 ntBASIC16.81■□□□□ 0.28
MSH3P20585 TUBB7P-202ENST00000428444 1305 ntBASIC16.81■□□□□ 0.28
MSH3P20585 TUBB8P7-204ENST00000567960 1332 ntBASIC16.81■□□□□ 0.28
MSH3P20585 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
MSH3P20585 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 SLC25A1P1-201ENST00000528351 927 ntBASIC16.81■□□□□ 0.28
MSH3P20585 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
MSH3P20585 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms