Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC105233.2-201ENST00000523697 349 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGA1P17096 AF228730.5-201ENST00000530288 346 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGA1P17096 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGA1P17096 AC092364.2-202ENST00000597012 1073 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 AC138649.4-201ENST00000612222 287 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HMGA1P17096 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGA1P17096 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 AC060834.1-201ENST00000443027 2032 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGA1P17096 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
HMGA1P17096 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.39■□□□□ 0.38
HMGA1P17096 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
HMGA1P17096 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGA1P17096 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGA1P17096 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HMGA1P17096 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGA1P17096 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
HMGA1P17096 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HMGA1P17096 SPDYE7P-202ENST00000420373 878 ntBASIC17.39■□□□□ 0.37
HMGA1P17096 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGA1P17096 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGA1P17096 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 AL645728.1-201ENST00000366221 2101 ntBASIC17.39■□□□□ 0.37
HMGA1P17096 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HMGA1P17096 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGA1P17096 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGA1P17096 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGA1P17096 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HMGA1P17096 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGA1P17096 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 AC107890.1-201ENST00000422478 521 ntBASIC17.38■□□□□ 0.37
HMGA1P17096 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGA1P17096 AC125807.1-201ENST00000483097 614 ntBASIC17.38■□□□□ 0.37
HMGA1P17096 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.38■□□□□ 0.37
HMGA1P17096 AC140878.1-201ENST00000565277 250 ntBASIC17.38■□□□□ 0.37
HMGA1P17096 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGA1P17096 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.38■□□□□ 0.37
HMGA1P17096 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGA1P17096 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGA1P17096 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGA1P17096 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGA1P17096 AL391256.1-201ENST00000443260 1855 ntBASIC17.37■□□□□ 0.37
HMGA1P17096 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGA1P17096 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGA1P17096 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGA1P17096 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 MIR943-201ENST00000401286 94 ntBASIC17.37■□□□□ 0.37
HMGA1P17096 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGA1P17096 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGA1P17096 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms