Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.65■□□□□ 0.74
CDKL5O76039 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDKL5O76039 HLA-A-202ENST00000376806 1854 ntBASIC19.65■□□□□ 0.74
CDKL5O76039 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.65■□□□□ 0.74
CDKL5O76039 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.64■□□□□ 0.74
CDKL5O76039 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
CDKL5O76039 PCDHA14-201ENST00000506751 2298 ntBASIC19.64■□□□□ 0.74
CDKL5O76039 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CDKL5O76039 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 AL031284.1-201ENST00000419297 478 ntBASIC19.64■□□□□ 0.73
CDKL5O76039 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.64■□□□□ 0.73
CDKL5O76039 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CDKL5O76039 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.64■□□□□ 0.73
CDKL5O76039 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.64■□□□□ 0.73
CDKL5O76039 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDKL5O76039 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CDKL5O76039 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CDKL5O76039 AC099398.1-201ENST00000567919 2776 ntBASIC19.63■□□□□ 0.73
CDKL5O76039 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CDKL5O76039 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDKL5O76039 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.63■□□□□ 0.73
CDKL5O76039 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
CDKL5O76039 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDKL5O76039 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDKL5O76039 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 MRPL20P1-201ENST00000400819 433 ntBASIC19.63■□□□□ 0.73
CDKL5O76039 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.63■□□□□ 0.73
CDKL5O76039 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 AC093909.1-201ENST00000504731 1122 ntBASIC19.63■□□□□ 0.73
CDKL5O76039 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDKL5O76039 AL662844.1-201ENST00000546340 181 ntBASIC19.63■□□□□ 0.73
CDKL5O76039 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.63■□□□□ 0.73
CDKL5O76039 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.63■□□□□ 0.73
CDKL5O76039 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CDKL5O76039 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDKL5O76039 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CDKL5O76039 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.63■□□□□ 0.73
CDKL5O76039 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.62■□□□□ 0.73
CDKL5O76039 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.62■□□□□ 0.73
CDKL5O76039 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 AC006538.1-201ENST00000567905 1585 ntBASIC19.62■□□□□ 0.73
CDKL5O76039 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CDKL5O76039 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.62■□□□□ 0.73
CDKL5O76039 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 AL353732.1-201ENST00000569618 1459 ntBASIC19.62■□□□□ 0.73
CDKL5O76039 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CDKL5O76039 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.62■□□□□ 0.73
CDKL5O76039 AC107918.2-201ENST00000530817 355 ntBASIC19.62■□□□□ 0.73
CDKL5O76039 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.62■□□□□ 0.73
CDKL5O76039 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.62■□□□□ 0.73
CDKL5O76039 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.62■□□□□ 0.73
CDKL5O76039 AC005412.3-201ENST00000580309 715 ntBASIC19.62■□□□□ 0.73
CDKL5O76039 AC117500.6-201ENST00000624871 588 ntBASIC19.62■□□□□ 0.73
CDKL5O76039 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDKL5O76039 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.62■□□□□ 0.73
CDKL5O76039 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms