Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.08■□□□□ 0.16
PROM1O43490 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PROM1O43490 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PROM1O43490 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PROM1O43490 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.07■□□□□ 0.16
PROM1O43490 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.07■□□□□ 0.16
PROM1O43490 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PROM1O43490 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 AC087163.2-201ENST00000457299 853 ntBASIC16.07■□□□□ 0.16
PROM1O43490 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 AP001005.1-201ENST00000571755 1248 ntBASIC16.07■□□□□ 0.16
PROM1O43490 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.07■□□□□ 0.16
PROM1O43490 AC005593.1-201ENST00000624894 515 ntBASIC16.07■□□□□ 0.16
PROM1O43490 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
PROM1O43490 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.07■□□□□ 0.16
PROM1O43490 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.07■□□□□ 0.16
PROM1O43490 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PROM1O43490 AL162727.3-201ENST00000635661 2787 ntBASIC16.07■□□□□ 0.16
PROM1O43490 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PROM1O43490 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.06■□□□□ 0.16
PROM1O43490 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
PROM1O43490 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
PROM1O43490 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 HLA-A-201ENST00000376802 1334 ntBASIC16.06■□□□□ 0.16
PROM1O43490 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.06■□□□□ 0.16
PROM1O43490 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.06■□□□□ 0.16
PROM1O43490 IGHV3-65-201ENST00000523210 341 ntBASIC16.06■□□□□ 0.16
PROM1O43490 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.06■□□□□ 0.16
PROM1O43490 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 MIR7706-201ENST00000613747 67 ntBASIC16.06■□□□□ 0.16
PROM1O43490 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.06■□□□□ 0.16
PROM1O43490 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PROM1O43490 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PROM1O43490 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PROM1O43490 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.06■□□□□ 0.16
PROM1O43490 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PROM1O43490 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.05■□□□□ 0.16
PROM1O43490 KRT8P49-201ENST00000604166 1432 ntBASIC16.05■□□□□ 0.16
PROM1O43490 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 AC002310.6-201ENST00000624451 1377 ntBASIC16.05■□□□□ 0.16
PROM1O43490 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PROM1O43490 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PROM1O43490 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.05■□□□□ 0.16
PROM1O43490 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.05■□□□□ 0.16
PROM1O43490 AC092910.1-201ENST00000482027 1129 ntBASIC16.05■□□□□ 0.16
PROM1O43490 AC093909.1-201ENST00000504731 1122 ntBASIC16.05■□□□□ 0.16
PROM1O43490 AC079776.4-201ENST00000511039 504 ntBASIC16.05■□□□□ 0.16
PROM1O43490 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.05■□□□□ 0.16
PROM1O43490 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.05■□□□□ 0.16
PROM1O43490 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PROM1O43490 AC116407.3-201ENST00000623905 1129 ntBASIC16.05■□□□□ 0.16
PROM1O43490 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.05■□□□□ 0.16
PROM1O43490 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.05■□□□□ 0.16
PROM1O43490 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PROM1O43490 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms