Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 HCG4P8-203ENST00000443049 980 ntBASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 KRT18P31-201ENST00000506277 1292 ntBASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 MTDHP3-201ENST00000594186 672 ntBASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 AL139424.1-201ENST00000607572 797 ntBASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 AL355877.3-201ENST00000622820 899 ntBASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HIF3AQ9Y2N7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 TSPY19P-201ENST00000418461 509 ntBASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 TSPY18P-201ENST00000441642 509 ntBASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIF3AQ9Y2N7 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 FGFR3P6-201ENST00000457012 610 ntBASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms