Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 MPDU1-223ENST00000582151 728 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 AC013467.2-201ENST00000605472 835 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 AC004790.2-201ENST00000623588 572 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 AC006277.1-201ENST00000624348 1610 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CCDC140Q96MF4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.08□□□□□ -0.31
CCDC140Q96MF4 OR6D1P-203ENST00000641209 4860 ntBASIC13.08□□□□□ -0.31
CCDC140Q96MF4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.31
CCDC140Q96MF4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 PCDHA14-201ENST00000506751 2298 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 IGHV3-22-201ENST00000520721 359 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 OR7E47P-204ENST00000575924 449 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 MIR4751-201ENST00000578027 74 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 AC091167.2-201ENST00000579581 588 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 SLC22A20-204ENST00000530038 1673 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 AC129492.6-201ENST00000611383 1305 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 UBALD1-205ENST00000590891 2641 ntBASIC13.08□□□□□ -0.32
CCDC140Q96MF4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC140Q96MF4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.07□□□□□ -0.32
CCDC140Q96MF4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms