Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 FRMD8P1-201ENST00000440433 1524 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 DUX4L17-201ENST00000557360 1267 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 RARRES2P8-201ENST00000566335 367 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AC015911.4-201ENST00000588022 1070 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AL009183.1-201ENST00000603760 355 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AL161645.1-201ENST00000622716 1255 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 Z92544.3-201ENST00000624747 417 ntBASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.93■□□□□ 0.3
HDDC3Q8N4P3 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 SLC22A20-204ENST00000530038 1673 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AL627223.1-201ENST00000416693 442 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AL592309.1-201ENST00000443127 649 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 TERF1P3-201ENST00000505638 1227 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AC079140.1-201ENST00000508039 487 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AL135744.1-201ENST00000565098 629 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AC091167.2-201ENST00000579581 588 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 AC009093.7-201ENST00000623853 1223 ntBASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDDC3Q8N4P3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 AC068880.1-201ENST00000507289 2297 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms