Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 AC004449.1-201ENST00000564240 433 ntBASIC18.36■□□□□ 0.53
VPS52Q8N1B4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 ACTL9-202ENST00000612068 1252 ntBASIC18.36■□□□□ 0.53
VPS52Q8N1B4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.36■□□□□ 0.53
VPS52Q8N1B4 REXO1L3P-201ENST00000622202 1288 ntBASIC18.36■□□□□ 0.53
VPS52Q8N1B4 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.36■□□□□ 0.53
VPS52Q8N1B4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 REXO1L11P-201ENST00000620964 1927 ntBASIC18.35■□□□□ 0.53
VPS52Q8N1B4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PAWRP1-201ENST00000451083 565 ntBASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 AC092364.2-202ENST00000597012 1073 ntBASIC18.35■□□□□ 0.53
VPS52Q8N1B4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PCDHA12-202ENST00000613593 2588 ntBASIC18.35■□□□□ 0.53
VPS52Q8N1B4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 FAM8A3P-201ENST00000427218 844 ntBASIC18.34■□□□□ 0.53
VPS52Q8N1B4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS52Q8N1B4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS52Q8N1B4 AL355312.1-201ENST00000407115 2176 ntBASIC18.33■□□□□ 0.52
VPS52Q8N1B4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms