Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 FAAHP1-202ENST00000446499 1238 ntBASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AC018712.1-201ENST00000455767 687 ntBASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 AC092171.3-201ENST00000610122 2651 ntBASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.97■□□□□ 0.15
CCDC116Q8IYX3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 RPS2P28-201ENST00000314255 741 ntBASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC073621.1-201ENST00000392730 636 ntBASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC012640.2-201ENST00000561606 901 ntBASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC104692.2-201ENST00000603054 253 ntBASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AC008735.5-201ENST00000623544 497 ntBASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC116Q8IYX3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.14
CCDC116Q8IYX3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CCDC116Q8IYX3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC116Q8IYX3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC116Q8IYX3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC116Q8IYX3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC116Q8IYX3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms