Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 AP002490.2-201ENST00000524791 560 ntBASIC12.01□□□□□ -0.49
RPL39P62891 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.01□□□□□ -0.49
RPL39P62891 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.01□□□□□ -0.49
RPL39P62891 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC12.01□□□□□ -0.49
RPL39P62891 AC097374.2-201ENST00000618617 1306 ntBASIC12.01□□□□□ -0.49
RPL39P62891 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.01□□□□□ -0.49
RPL39P62891 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC12.01□□□□□ -0.49
RPL39P62891 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.01□□□□□ -0.49
RPL39P62891 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.01□□□□□ -0.49
RPL39P62891 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.01□□□□□ -0.49
RPL39P62891 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 GPR89P-201ENST00000407924 1495 ntBASIC12.01□□□□□ -0.49
RPL39P62891 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
RPL39P62891 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
RPL39P62891 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
RPL39P62891 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
RPL39P62891 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
RPL39P62891 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12□□□□□ -0.49
RPL39P62891 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
RPL39P62891 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC12□□□□□ -0.49
RPL39P62891 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC12□□□□□ -0.49
RPL39P62891 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
RPL39P62891 HLA-F-220ENST00000434407 884 ntBASIC12□□□□□ -0.49
RPL39P62891 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC12□□□□□ -0.49
RPL39P62891 AP003733.1-201ENST00000491725 852 ntBASIC12□□□□□ -0.49
RPL39P62891 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
RPL39P62891 AL023973.1-201ENST00000624619 620 ntBASIC12□□□□□ -0.49
RPL39P62891 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 AC141257.4-201ENST00000634557 245 ntBASIC12□□□□□ -0.49
RPL39P62891 AC136944.6-201ENST00000634818 245 ntBASIC12□□□□□ -0.49
RPL39P62891 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12□□□□□ -0.49
RPL39P62891 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12□□□□□ -0.49
RPL39P62891 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
RPL39P62891 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12□□□□□ -0.49
RPL39P62891 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12□□□□□ -0.49
RPL39P62891 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12□□□□□ -0.49
RPL39P62891 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms