Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 TOP3BP1-201ENST00000420768 1380 ntBASIC17.07■□□□□ 0.32
CHRNA4P43681 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.07■□□□□ 0.32
CHRNA4P43681 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.07■□□□□ 0.32
CHRNA4P43681 AC107918.2-201ENST00000530817 355 ntBASIC17.07■□□□□ 0.32
CHRNA4P43681 OR7E47P-204ENST00000575924 449 ntBASIC17.07■□□□□ 0.32
CHRNA4P43681 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.07■□□□□ 0.32
CHRNA4P43681 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
CHRNA4P43681 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.07■□□□□ 0.32
CHRNA4P43681 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 AC124067.4-201ENST00000519691 2379 ntBASIC17.07■□□□□ 0.32
CHRNA4P43681 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA4P43681 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
CHRNA4P43681 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA4P43681 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 AL662844.1-201ENST00000546340 181 ntBASIC17.06■□□□□ 0.32
CHRNA4P43681 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA4P43681 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 GGTLC5P-201ENST00000617623 998 ntBASIC17.06■□□□□ 0.32
CHRNA4P43681 AC004790.2-201ENST00000623588 572 ntBASIC17.06■□□□□ 0.32
CHRNA4P43681 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
CHRNA4P43681 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA4P43681 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CHRNA4P43681 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CHRNA4P43681 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA4P43681 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CHRNA4P43681 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CHRNA4P43681 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 FDX1P1-201ENST00000449115 551 ntBASIC17.05■□□□□ 0.32
CHRNA4P43681 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.05■□□□□ 0.32
CHRNA4P43681 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA4P43681 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.05■□□□□ 0.32
CHRNA4P43681 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.05■□□□□ 0.32
CHRNA4P43681 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.05■□□□□ 0.32
CHRNA4P43681 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA4P43681 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms