Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFC4P35249 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFC4P35249 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RFC4P35249 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.06■□□□□ 0.96
RFC4P35249 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RFC4P35249 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.06■□□□□ 0.96
RFC4P35249 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RFC4P35249 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC21.06■□□□□ 0.96
RFC4P35249 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 DFFBP1-201ENST00000433250 979 ntBASIC21.06■□□□□ 0.96
RFC4P35249 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC21.06■□□□□ 0.96
RFC4P35249 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RFC4P35249 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC21.06■□□□□ 0.96
RFC4P35249 POLE2-203ENST00000553805 496 ntTSL 2 BASIC21.06■□□□□ 0.96
RFC4P35249 AC105021.1-202ENST00000570572 669 ntBASIC21.06■□□□□ 0.96
RFC4P35249 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RFC4P35249 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.06■□□□□ 0.96
RFC4P35249 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC21.06■□□□□ 0.96
RFC4P35249 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFC4P35249 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.05■□□□□ 0.96
RFC4P35249 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
RFC4P35249 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
RFC4P35249 AL512384.1-201ENST00000406683 331 ntBASIC21.05■□□□□ 0.96
RFC4P35249 AC087499.6-201ENST00000411576 835 ntBASIC21.05■□□□□ 0.96
RFC4P35249 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.05■□□□□ 0.96
RFC4P35249 AC104794.3-201ENST00000566840 1248 ntBASIC21.05■□□□□ 0.96
RFC4P35249 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC21.05■□□□□ 0.96
RFC4P35249 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC21.05■□□□□ 0.96
RFC4P35249 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 AL391825.1-201ENST00000457671 1364 ntBASIC21.05■□□□□ 0.96
RFC4P35249 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RFC4P35249 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFC4P35249 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RFC4P35249 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 AC132938.2-201ENST00000579188 680 ntBASIC21.04■□□□□ 0.96
RFC4P35249 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 AL591163.1-201ENST00000641757 987 ntBASIC21.04■□□□□ 0.96
RFC4P35249 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RFC4P35249 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.04■□□□□ 0.96
RFC4P35249 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFC4P35249 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RFC4P35249 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFC4P35249 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFC4P35249 AC073439.1-201ENST00000624121 1774 ntBASIC21.03■□□□□ 0.96
RFC4P35249 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFC4P35249 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.03■□□□□ 0.96
RFC4P35249 BTBD7P1-201ENST00000447253 1453 ntBASIC21.03■□□□□ 0.96
RFC4P35249 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RFC4P35249 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RFC4P35249 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFC4P35249 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms