Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.08■□□□□ 0.16
PTPN6P29350 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.08■□□□□ 0.16
PTPN6P29350 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.08■□□□□ 0.16
PTPN6P29350 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
PTPN6P29350 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.08■□□□□ 0.16
PTPN6P29350 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTPN6P29350 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTPN6P29350 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTPN6P29350 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTPN6P29350 ALOX12P2-203ENST00000570921 1945 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 AC026396.1-201ENST00000419388 421 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.07■□□□□ 0.16
PTPN6P29350 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 AL160237.2-201ENST00000556165 472 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.07■□□□□ 0.16
PTPN6P29350 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTPN6P29350 AC008608.2-201ENST00000606089 416 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 AL355877.3-201ENST00000622820 899 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.07■□□□□ 0.16
PTPN6P29350 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 AP005117.1-201ENST00000584346 1413 ntBASIC16.07■□□□□ 0.16
PTPN6P29350 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTPN6P29350 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PTPN6P29350 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN6P29350 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PTPN6P29350 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
PTPN6P29350 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 CICP6-201ENST00000457191 2729 ntBASIC16.06■□□□□ 0.16
PTPN6P29350 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.06■□□□□ 0.16
PTPN6P29350 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.06■□□□□ 0.16
PTPN6P29350 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN6P29350 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PTPN6P29350 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN6P29350 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN6P29350 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms