Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COL5A3P25940 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.96■□□□□ 0.95
COL5A3P25940 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.96■□□□□ 0.95
COL5A3P25940 AC092337.1-201ENST00000568699 1129 ntBASIC20.96■□□□□ 0.95
COL5A3P25940 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.96■□□□□ 0.95
COL5A3P25940 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A3P25940 AL109936.8-201ENST00000641772 604 ntBASIC20.96■□□□□ 0.95
COL5A3P25940 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL5A3P25940 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL5A3P25940 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A3P25940 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL5A3P25940 KRT8P39-201ENST00000396270 1433 ntBASIC20.96■□□□□ 0.95
COL5A3P25940 NOC2LP1-202ENST00000452600 2235 ntBASIC20.96■□□□□ 0.95
COL5A3P25940 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20.96■□□□□ 0.95
COL5A3P25940 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A3P25940 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL5A3P25940 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 DOC2GP-202ENST00000514950 1163 ntBASIC20.95■□□□□ 0.94
COL5A3P25940 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.95■□□□□ 0.94
COL5A3P25940 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.95■□□□□ 0.94
COL5A3P25940 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
COL5A3P25940 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.95■□□□□ 0.94
COL5A3P25940 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.95■□□□□ 0.94
COL5A3P25940 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
COL5A3P25940 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
COL5A3P25940 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.95■□□□□ 0.94
COL5A3P25940 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.95■□□□□ 0.94
COL5A3P25940 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.95■□□□□ 0.94
COL5A3P25940 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.95■□□□□ 0.94
COL5A3P25940 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.95■□□□□ 0.94
COL5A3P25940 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.95■□□□□ 0.94
COL5A3P25940 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COL5A3P25940 USP32P1-208ENST00000506594 1164 ntBASIC20.95■□□□□ 0.94
COL5A3P25940 TPRX2P-201ENST00000535362 881 ntBASIC20.95■□□□□ 0.94
COL5A3P25940 AC004461.2-201ENST00000629517 803 ntBASIC20.95■□□□□ 0.94
COL5A3P25940 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.95■□□□□ 0.94
COL5A3P25940 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A3P25940 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.94■□□□□ 0.94
COL5A3P25940 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL5A3P25940 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.94■□□□□ 0.94
COL5A3P25940 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.94■□□□□ 0.94
COL5A3P25940 SERBP1P3-201ENST00000459980 809 ntBASIC20.94■□□□□ 0.94
COL5A3P25940 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.94■□□□□ 0.94
COL5A3P25940 ELK1P1-201ENST00000485699 580 ntBASIC20.94■□□□□ 0.94
COL5A3P25940 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.94■□□□□ 0.94
COL5A3P25940 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL5A3P25940 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A3P25940 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.93■□□□□ 0.94
COL5A3P25940 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL5A3P25940 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.93■□□□□ 0.94
COL5A3P25940 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.93■□□□□ 0.94
COL5A3P25940 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms