Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC060834.1-201ENST00000443027 2032 ntBASIC17.8■□□□□ 0.44
BDNFP23560 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
BDNFP23560 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
BDNFP23560 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BDNFP23560 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.79■□□□□ 0.44
BDNFP23560 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BDNFP23560 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BDNFP23560 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.79■□□□□ 0.44
BDNFP23560 AL121761.2-201ENST00000598007 1648 ntBASIC17.79■□□□□ 0.44
BDNFP23560 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BDNFP23560 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BDNFP23560 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.79■□□□□ 0.44
BDNFP23560 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.79■□□□□ 0.44
BDNFP23560 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 TUBB8P12-201ENST00000308911 1335 ntBASIC17.78■□□□□ 0.44
BDNFP23560 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 TUBB7P-202ENST00000428444 1305 ntBASIC17.78■□□□□ 0.44
BDNFP23560 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 TUBB8P7-204ENST00000567960 1332 ntBASIC17.78■□□□□ 0.44
BDNFP23560 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
BDNFP23560 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
BDNFP23560 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.78■□□□□ 0.44
BDNFP23560 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.78■□□□□ 0.44
BDNFP23560 SNHG9-202ENST00000564014 471 ntBASIC17.78■□□□□ 0.44
BDNFP23560 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.78■□□□□ 0.44
BDNFP23560 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 AC099522.2-201ENST00000607001 744 ntBASIC17.78■□□□□ 0.44
BDNFP23560 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 AC012313.1-201ENST00000593393 3059 ntBASIC17.78■□□□□ 0.44
BDNFP23560 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
BDNFP23560 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BDNFP23560 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.78■□□□□ 0.44
BDNFP23560 PCDHB17P-201ENST00000539533 2393 ntBASIC17.77■□□□□ 0.44
BDNFP23560 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.77■□□□□ 0.44
BDNFP23560 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.77■□□□□ 0.44
BDNFP23560 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
BDNFP23560 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
BDNFP23560 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
BDNFP23560 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.77■□□□□ 0.44
BDNFP23560 AC254562.1-201ENST00000417586 456 ntBASIC17.77■□□□□ 0.44
BDNFP23560 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.77■□□□□ 0.44
BDNFP23560 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.77■□□□□ 0.44
BDNFP23560 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.77■□□□□ 0.44
BDNFP23560 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.77■□□□□ 0.44
BDNFP23560 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.77■□□□□ 0.44
BDNFP23560 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.77■□□□□ 0.44
BDNFP23560 MIR4492-201ENST00000581627 80 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms