Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 FAM197Y1-201ENST00000421178 764 ntBASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 PPP1R14BP5-201ENST00000440334 435 ntBASIC12.78□□□□□ -0.36
HLA-DQA1P01909 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 AC073195.1-201ENST00000607241 877 ntBASIC12.78□□□□□ -0.36
HLA-DQA1P01909 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 TCAF2P1-201ENST00000291129 2421 ntBASIC12.78□□□□□ -0.36
HLA-DQA1P01909 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DQA1P01909 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DQA1P01909 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 USP36-216ENST00000589424 970 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 AP001412.1-201ENST00000608405 714 ntBASIC12.77□□□□□ -0.37
HLA-DQA1P01909 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 AL353708.3-201ENST00000610272 989 ntBASIC12.77□□□□□ -0.37
HLA-DQA1P01909 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 AL031985.4-201ENST00000642138 673 ntBASIC12.77□□□□□ -0.37
HLA-DQA1P01909 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 MME-217ENST00000616757 1315 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 KRT8P47-201ENST00000604727 1398 ntBASIC12.77□□□□□ -0.37
HLA-DQA1P01909 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms