Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 TOP3BP1-201ENST00000420768 1380 ntBASIC18.98■□□□□ 0.63
ACTN4O43707 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.98■□□□□ 0.63
ACTN4O43707 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ACTN4O43707 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
ACTN4O43707 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
ACTN4O43707 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
ACTN4O43707 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.98■□□□□ 0.63
ACTN4O43707 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.98■□□□□ 0.63
ACTN4O43707 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.98■□□□□ 0.63
ACTN4O43707 PRELID1P1-202ENST00000567272 903 ntBASIC18.98■□□□□ 0.63
ACTN4O43707 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.98■□□□□ 0.63
ACTN4O43707 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.98■□□□□ 0.63
ACTN4O43707 AC012313.10-201ENST00000623509 926 ntBASIC18.98■□□□□ 0.63
ACTN4O43707 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.98■□□□□ 0.63
ACTN4O43707 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
ACTN4O43707 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ACTN4O43707 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.98■□□□□ 0.63
ACTN4O43707 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.98■□□□□ 0.63
ACTN4O43707 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.97■□□□□ 0.63
ACTN4O43707 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 AC002310.6-201ENST00000624451 1377 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.97■□□□□ 0.63
ACTN4O43707 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.97■□□□□ 0.63
ACTN4O43707 CYP2T1P-202ENST00000641596 2535 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.97■□□□□ 0.63
ACTN4O43707 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 PTCHD3P3-201ENST00000403073 906 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 ELK2BP-201ENST00000415014 1224 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.97■□□□□ 0.63
ACTN4O43707 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.97■□□□□ 0.63
ACTN4O43707 SAPCD2P3-201ENST00000455031 850 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 AC087163.2-201ENST00000457299 853 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 AC021087.4-201ENST00000563761 564 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
ACTN4O43707 REXO1L3P-201ENST00000622202 1288 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ACTN4O43707 AL139011.1-202ENST00000642063 584 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ACTN4O43707 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 AC006504.4-201ENST00000592118 1568 ntBASIC18.97■□□□□ 0.63
ACTN4O43707 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.97■□□□□ 0.63
ACTN4O43707 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ACTN4O43707 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
ACTN4O43707 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.96■□□□□ 0.63
ACTN4O43707 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ACTN4O43707 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
ACTN4O43707 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ACTN4O43707 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.96■□□□□ 0.63
ACTN4O43707 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 AC026691.1-201ENST00000602502 2017 ntBASIC18.96■□□□□ 0.63
ACTN4O43707 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.96■□□□□ 0.63
ACTN4O43707 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ACTN4O43707 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ACTN4O43707 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.95■□□□□ 0.62
ACTN4O43707 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ACTN4O43707 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.95■□□□□ 0.62
ACTN4O43707 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.95■□□□□ 0.62
ACTN4O43707 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ACTN4O43707 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ACTN4O43707 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.95■□□□□ 0.62
ACTN4O43707 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
ACTN4O43707 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ACTN4O43707 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ACTN4O43707 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ACTN4O43707 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.95■□□□□ 0.62
ACTN4O43707 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.95■□□□□ 0.62
ACTN4O43707 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms