Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC13.68□□□□□ -0.22
HMGB3O15347 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HMGB3O15347 AC093525.9-201ENST00000624961 1746 ntBASIC13.67□□□□□ -0.22
HMGB3O15347 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HMGB3O15347 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.67□□□□□ -0.22
HMGB3O15347 PDE12-201ENST00000311180 8773 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.67□□□□□ -0.22
HMGB3O15347 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 GRAMD4P1-201ENST00000435181 1110 ntBASIC13.67□□□□□ -0.22
HMGB3O15347 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC13.67□□□□□ -0.22
HMGB3O15347 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC13.67□□□□□ -0.22
HMGB3O15347 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 AC006058.3-201ENST00000606217 1069 ntBASIC13.67□□□□□ -0.22
HMGB3O15347 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HMGB3O15347 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
HMGB3O15347 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HMGB3O15347 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HMGB3O15347 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 AC024909.3-201ENST00000611513 2257 ntBASIC13.66□□□□□ -0.22
HMGB3O15347 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC13.66□□□□□ -0.22
HMGB3O15347 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 KRT18P29-201ENST00000397031 1267 ntBASIC13.66□□□□□ -0.22
HMGB3O15347 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 AL355355.2-201ENST00000442321 338 ntBASIC13.66□□□□□ -0.22
HMGB3O15347 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC13.66□□□□□ -0.22
HMGB3O15347 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 ETFA-216ENST00000560726 942 ntTSL 3 BASIC13.66□□□□□ -0.22
HMGB3O15347 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC13.66□□□□□ -0.22
HMGB3O15347 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms