Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
UBFD1O14562 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
UBFD1O14562 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
UBFD1O14562 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
UBFD1O14562 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.44■□□□□ 0.22
UBFD1O14562 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBFD1O14562 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 AC138894.3-201ENST00000603787 634 ntBASIC16.43■□□□□ 0.22
UBFD1O14562 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.43■□□□□ 0.22
UBFD1O14562 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.43■□□□□ 0.22
UBFD1O14562 SNX33P1-201ENST00000592116 1762 ntBASIC16.43■□□□□ 0.22
UBFD1O14562 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.43■□□□□ 0.22
UBFD1O14562 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBFD1O14562 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
UBFD1O14562 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.43■□□□□ 0.22
UBFD1O14562 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.42■□□□□ 0.22
UBFD1O14562 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
UBFD1O14562 AC106795.1-205ENST00000512851 1056 ntBASIC16.42■□□□□ 0.22
UBFD1O14562 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.42■□□□□ 0.22
UBFD1O14562 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.42■□□□□ 0.22
UBFD1O14562 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.42■□□□□ 0.22
UBFD1O14562 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBFD1O14562 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.41■□□□□ 0.22
UBFD1O14562 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
UBFD1O14562 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms